• RNDr. Radek Šíma, Ph.D.
    RNDr. Radek Šíma, Ph.D.

    VŠ specialista

Seznam publikací

Publikace s IF

  1. Nìng C, Valdés JJ, Mateos-Hernández L, Rakotobe S, Abuin-Denis L, Haddad N, Šofranková L, Slovák M, Boussaine K, Cartereau A, Taillebois E, Attoui H, Frantová H, Urbanová V, Kozelková T, Dyčka F, Kopáček P, Hajdušek O, Šíma R, Týč J, Bílý T, Tesařová M, Vancová M, Perner J, Thany SH, Šimo L. Two types of axonal muscarinic acetylcholine receptors mediate formation of saliva cocktail in the tick Ixodes ricinus. Nat Commun. 2026 Jan 23. IF 15.7
  2. Pekľanská M, Kuníková K, Vlčková R, Slabová H, Hartmann D, Volfová K, Rudolf I, Šikutová S, Rego ROM, Noriega FG, Hajdušek O, Perner J, Votýpka J, Nouzová M, Šíma R. Experimental evidence rules out mosquitoes as vectors of Lyme disease. Parasit Vectors. 2025 Jun 4;18(1):206. IF 3.5
  3. Bradová M, Agaimy A, Laco J, Martínek P, Ing SK, Badoual C, Damjanov I, Leivo I, Bacchi CE, Comperat E, Ihrler S, Rupp NJ, Šíma R, Šteiner P, Vaněček T, Mueller S, Ventelä S, Skálová A, Michal M. Sinonasal adenoid cystic carcinomas accompanied by seromucinous hamartoma and/or atypical sinonasal glands arising from seromucinous hamartoma: insight into their histogenesis. Virchows Arch. 2025 Jun;486(6):1269-1287. IF 3.1
  4. Timotej Šúri, Lucie Pfeiferová, Matěj Bezdíček, Jan Svatoň, Vladimír Hampl, Karel Berka, Helena Jiřincová, Martina Lengerová, Martin Kolísko, Alexander Nagy, Ruth Tachezy, Jan Bartoš, Petr Brož, Vojtěch Bystrý, Martin Čech, Monika Čechová, Jiří Černý, Kateřina Chudějová, Iva Dolinová, Pavel Dřevínek, Edvard Ehler, Alena Fialová, Filip Franko, Viktor Furman, Zoltán Füssy, Markéta Gančarčíková, Alejandro Jiménez González, Marián Hajdúch, Blanka Hamplová, Václav Hejret, Petr Holub, Patrik Horna, Miluše Hradilová, Štěpánka Hrdá, Magdalena Jančářová, Michaela Jaroměřská, Eduard Ježo, Daniel Klimeš, Šárka Kocourková, Jana Kozáková, Martin Kracík, Jan Kubovčiak, Jana Fialová Kučerová, Jan Kynčl, Matej Lexa, Monika Liptáková, Jan Macháň, Barbora Macková, Marek Malý, Kateřina Matějová, Luděk Matyska, Hana Medová, Ondřej Moravčík, Jakub Mrázek, Serafim Nenarokov, Eva Niklova, Marian Novotný, Jaroslav Nunvář, Adam Obr, Hana Orlíková, Josef Pasulka, Helena Paszeková, Ingrid Poláková, Martin Pospíšek, Miroslav Ruda, Jana Šáchová, Eric Salomaki, Jeffrey Silberman, Radek Šíma, Branislav Šiška, Rastislav Slavkovský, Klára Sobotíková, Kateřina Štillerová, Viktor Stránecký, Alexander Tice, Boris Tichý, Markéta Tomková, Karolína Trachtová, Sebastian Cristian Treitli, Jaromíra Večeřová, David Vostřák, Jan Vrbský, Monika Wisniewska, Artsemi Yushkevich, Tomáš Zajíc, Martin Zmuda, Michal Kolář, Jan Pačes. Developing molecular surveillance of SARS-CoV-2 in the Czech Republic (2021-2022). Sci Rep. 2025 Jun 4;15(1):19690. IF 3.9
  5. Skálová A, Bradová M, Agaimy A, Laco J, Badual C, Ihrler S, Damjanov I, Rupp NJ, Bacchi CE, Mueller S, Ventelä S, Zhang D, Comperat E, Martínek P, Šíma R, Vaněček T, Grossmann P, Steiner P, Hájková V, Kovářová I, Michal M, Leivo I. Molecular Profiling of Sinonasal Adenoid Cystic Carcinoma: Canonical and Noncanonical Gene Fusions and Mutation. Am J Surg Pathol. 2025 Mar 1;49(3):227-242. IF 4.2
  6. Robbertse L, Šíma R, Hajdušek O, Perner J. Ixodes ricinus (Castor bean tick). Trends Parasitol. 2025 Feb;41(2):164-165. IF 6.6
  7. Pekľanská M, van Heerwaarden B, Hoffmann AA, Nouzová M, Šíma R, Ross PA. Elevated developmental temperatures below the lethal limit reduce Aedes aegypti fertility. J Exp Biol. 2025 Feb 1;228(3):JEB249803. IF 2.6
  8. João DA, Pancsa T, Kicko P, Langerová E, Šíma R, Hercogová J, Skálová A, Michal M, Kacerovská D. Secondary Syphilis Presenting With an Interstitial Granuloma Annulare-Like Histopathologic Pattern: A Report of 2 Cases. Am J Dermatopathol. 2025 Feb 1;47(2):122-127. IF 1.0
  9. Jalovecka M, Malandrin L, Urbanova V, Mahmood S, Snebergerova P, Peklanska M, Pavlasova V, Sima R, Kopacek P, Perner J, Hajdusek O. Activation of the tick Toll pathway to control infection of Ixodes ricinus by the apicomplexan parasite Babesia microti. PLoS Pathog. 2024 Dec 16;20(12):e1012743. IF 4.9
  10. Šíma R, Palusová A, Hatalová T, Robbertse L, Berková P, Moos M, Kopáček P, Urbanová V, Perner J. Fipronil prevents transmission of Lyme disease spirochetes. Parasitology. 2024 Aug;151(9):953-961. IF 2.4
  11. Matoušková Z, Orsághová K, Srb P, Pytelková J, Kukačka Z, Buša M, Hajdušek O, Šíma R, Fábry M, Novák P, Horn M, Kopáček P, Mareš M. An Unusual Two-Domain Thyropin from Tick Saliva: NMR Solution Structure and Highly Selective Inhibition of Cysteine Cathepsins Modulated by Glycosaminoglycans. Int J Mol Sci. 2024 Feb 13;25(4):2240. IF 4.9
  12. Kozelková T, Dyčka F, Lu S, Urbanová V, Frantová H, Sojka D, Šíma R, Horn M, Perner J, Kopáček P. Insight Into the Dynamics of the Ixodes ricinus Nymphal Midgut Proteome. Mol Cell Proteomics. 2023 Nov;22(11):100663. IF 5.5
  13. Klouwens MJ, Trentelman JJA, Barriales D, Ersoz JI, Azkargorta M, Elortza F, Šíma R, Hajdušek O, Lavin JL, Tomás Cortazar J, Escobes Corcuera I, Colstrup E, Nayak A, Martín Ruíz I, Rodriguez H, Nijhof AM, Anguita J, Hovius JWR. The Ixodes ricinus salivary gland proteome during feeding and B. afzelii infection: New avenues for an anti-tick vaccine. Vaccine. 2023 Mar 17;41(12):1951-1960. IF 2.2
  14. Wu-Chuang A, Mateos-Hernandez L, Maitre A, Rego ROM, Šíma R, Porcelli S, Rakotobe S, Foucault-Simonin A, Moutailler S, Palinauskas V, Aželytė J, Sǐmo L, Obregon D, Cabezas-Cruz A. Microbiota perturbation by anti-microbiota vaccine reduces the colonization of Borrelia afzelii in Ixodes ricinus. Microbiome. 2023 Jul 24;11(1):151. IF 12.7
  15. Trentelman JJA, de Vogel FA, Colstrup E, Sima R, Coumou J, Koetsveld J, Klouwens MJ, Nayak A, Ersoz J, Barriales D, Tomás-Cortázar J, Narasimhan S, Hajdusek O, Anguita J, Hovius JW. Identification of novel conserved Ixodes vaccine candidates; a promising role for non-secreted salivary gland proteins. Vaccine. 2022 Dec 12;40(52):7593-7603. IF 2.2
  16. Urbanová V, Kalinová E, Kopáček P, Šíma R. Experimental Infection of Mice and Ticks with the Human Isolate of Anaplasma phagocytophilum NY-18. Pathogens. 2022 Jul 21;11(7):820. IF 3.3
  17. Perner J, Kucera M, Frantova H, Urbanova V, Kopacek P, Sima R. Lyme disease transmission by severely impaired ticks. Open Biol. 2022 Feb;12(2):210244. IF 3.6
  18. Kopáček P, Šíma R, Perner J. An mRNA-based anti-tick vaccine catches ticks red-handed. Sci Transl Med. 2021 Nov 17;13(620):eabm2504. IF 14.6
  19. Trentelman JJA, Tomás-Cortázar J, Knorr S, Barriales D, Hajdusek O, Sima R, Ersoz JI, Narasimhan S, Fikrig E, Nijhof AM, Anguita J, Hovius JW. Probing an Ixodes ricinus salivary gland yeast surface display with tick-exposed human sera to identify novel candidates for an anti-tick vaccine. Sci Rep. 2021 Aug 3;11(1):15745. IF 3.9
  20. Klouwens MJ, Trentelman JJ, Ersoz JI, Nieves Marques Porto F, Sima R, Hajdusek O, Thakur M, Pal U, Hovius JW. Investigating BB0405 as a novel Borrelia afzelii vaccination candidate in Lyme borreliosis. Sci Rep. 2021 Feb 26;11(1):4775. IF 3.9
  21. Mahmood S, Sima R, Urbanova V, Trentelman JJA, Krezdorn N, Winter P, Kopacek P, Hovius JW, Hajdusek O. Identification of Tick Ixodes ricinus Midgut Genes Differentially Expressed During the Transmission of Borrelia afzelii Spirochetes Using a Transcriptomic Approach. Front Immunol. 2021 Feb 4;11:612412. IF 5.9
  22. Trentelman JJA, Sima R, Krezdorn N, Tomás-Cortázar J, Barriales D, Takumi K, Butler JM, Sprong H, Klouwens MJ, Urbanova V, Mahmood S, Winter P, Kopacek P, Anguita J, Hajdusek O, Hovius JW. A combined transcriptomic approach to identify candidates for an anti-tick vaccine blocking B. afzelii transmission. Sci Rep. 2020 Nov 18;10(1):20061. IF 3.9
  23. Mateos-Hernandéz L, Defaye B, Vancová M, Hajdusek O, Sima R, Park Y, Attoui H, Šimo L. Cholinergic axons regulate type I acini in salivary glands of Ixodes ricinus and Ixodes scapularis ticks. Sci Rep. 2020 Sep 29;10(1):16054. IF 3.9
  24. Kamp HD, Swanson KA, Wei RR, Dhal PK, Dharanipragada R, Kern A, Sharma B, Sima R, Hajdusek O, Hu LT, Wei CJ, Nabel GJ. Design of a broadly reactive Lyme disease vaccine. NPJ Vaccines. 2020 May 1;5(1):33. IF 6.6
  25. Gobl J, Kumar Sinha D, Sima R, Perner J, Kopáček P, Valdés JJ, Rego ROM, Cabezas-Cruz A. Histone Methyltransferase DOT1L is Involved in Larval Molting and Second Stage Nymphal Feeding in Ornithodoros moubata. Vaccines (Basel). 2020 Apr 1;8(2):157. IF 3.4
  26. Kosakyan A, Alama-Bermejo G, Bartošová-Sojková P, Born-Torrijos A, Šíma R, Nenarokova A, Eszterbauer E, Bartholomew J, Holzer AS. Selection of suitable reference genes for gene expression studies in myxosporean (Myxozoa, Cnidaria) parasites. Sci Rep. 2019 Oct 21;9(1):15073. IF 3.9
  27. Rego ROM, Trentelman JJA, Anguita J, Nijhof AM, Sprong H, Klempa B, Hajdusek O, Tomás-Cortázar J, Azagi T, Strnad M, Knorr S, Sima R, Jalovecka M, Fumačová Havlíková S, Ličková M, Sláviková M, Kopacek P, Grubhoffer L, Hovius JW. Counterattacking the tick bite: towards a rational design of anti-tick vaccines targeting pathogen transmission. Parasit Vectors. 2019 May 14;12(1):229. IF 3.5
  28. Korytář T, Wiegertjes GF, Zusková E, Tomanová A, Lisnerová M, Patra S, Sieranski V, Šíma R, Born-Torrijos A, Wentzel AS, Blasco-Monleon S, Yanes-Roca C, Policar T, Holzer AS. The kinetics of cellular and humoral immune responses of common carp to presporogonic development of the myxozoan Sphaerospora molnari. Parasit Vectors. 2019 May 6;12(1):208. IF 3.5
  29. Pospisilova T, Urbanova V, Hes O, Kopacek P, Hajdusek O, Sima R. Tracking of Borrelia afzelii Transmission from Infected Ixodes ricinus Nymphs to Mice. Infect Immun. 2019 May 21;87(6):e00896-18. IF 2.8
  30. Urbanová V, Hajdušek O, Šíma R, Franta Z, Hönig-Mondeková H, Grunclová L, Bartošová-Sojková P, Jalovecká M, Kopáček P. IrC2/Bf - A yeast and Borrelia responsive component of the complement system from the hard tick Ixodes ricinus. Dev Comp Immunol. 2018 Feb;79:86-94. IF 2.4
  31. Hartmann D, Šíma R, Konvičková J, Perner J, Kopáček P, Sojka D. Multiple legumain isoenzymes in ticks. Int J Parasitol. 2018 Feb;48(2):167-178. IF 3.2
  32. Panetta JL, Šíma R, Calvani NED, Hajdušek O, Chandra S, Panuccio J, Šlapeta J. Reptile-associated Borrelia species in the goanna tick (Bothriocroton undatum) from Sydney, Australia. Parasit Vectors. 2017 Dec 20;10(1):616. IF 3.5
  33. Honig Mondekova H, Sima R, Urbanova V, Kovar V, Rego ROM, Grubhoffer L, Kopacek P, Hajdusek O. Characterization of Ixodes ricinus Fibrinogen-Related Proteins (Ixoderins) Discloses Their Function in the Tick Innate Immunity. Front Cell Infect Microbiol. 2017 Dec 8;7:509. IF 4.8
  34. Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíková K. A benign helminth alters the host immune system and the gut microbiota in a rat model system. PLoS One. 2017 Aug 3;12(8):e0182205. IF 2.6
  35. Urbanová V, Hajdušek O, Hönig Mondeková H, Šíma R, Kopáček P. Tick Thioester-Containing Proteins and Phagocytosis Do Not Affect Transmission of Borrelia afzelii from the Competent Vector Ixodes ricinus. Front Cell Infect Microbiol. 2017 Mar 16;7:73. IF 4.8
  36. Valdés JJ, Cabezas-Cruz A, Sima R, Butterill PT, Růžek D, Nuttall PA. Substrate prediction of Ixodes ricinus salivary lipocalins differentially expressed during Borrelia afzelii infection. Sci Rep. 2016 Sep 1;6:32372. IF 3.9
  37. Hajdusek O, Sima R, Perner J, Loosova G, Harcubova A, Kopacek P. Tick iron and heme metabolism - New target for an anti-tick intervention. Ticks Tick Borne Dis. 2016 Jun;7(4):565-72. IF 3.4
  38. Perner J, Sobotka R, Sima R, Konvickova J, Sojka D, Oliveira PL, Hajdusek O, Kopacek P. Acquisition of exogenous haem is essential for tick reproduction. Elife. 2016 Mar 7;5:e12318. IF 6.4
  39. Aase A, Hajdusek O, Øines Ø, Quarsten H, Wilhelmsson P, Herstad TK, Kjelland V, Sima R, Jalovecka M, Lindgren PE, Aaberge IS. Validate or falsify: Lessons learned from a microscopy method claimed to be useful for detecting Borrelia and Babesia organisms in human blood. Infect Dis (Lond). 2016;48(6):411-9. IF 3.0
  40. Ayllón N, Naranjo V, Hajdušek O, Villar M, Galindo RC, Kocan KM, Alberdi P, Šíma R, Cabezas-Cruz A, Rückert C, Bell-Sakyi L, Kazimírová M, Havlíková S, Klempa B, Kopáček P, de la Fuente J. Nuclease Tudor-SN Is Involved in Tick dsRNA-Mediated RNA Interference and Feeding but Not in Defense against Flaviviral or Anaplasma phagocytophilum Rickettsial Infection. PLoS One. 2015 Jul 17;10(7):e0133038. IF 2.6
  41. Ayllón N, Villar M, Galindo RC, Kocan KM, Šíma R, López JA, Vázquez J, Alberdi P, Cabezas-Cruz A, Kopáček P, de la Fuente J. Systems biology of tissue-specific response to Anaplasma phagocytophilum reveals differentiated apoptosis in the tick vector Ixodes scapularis. PLoS Genet. 2015 Mar 27;11(3):e1005120. IF 6.6
  42. Urbanová V, Šíma R, Šauman I, Hajdušek O, Kopáček P. Thioester-containing proteins of the tick Ixodes ricinus: gene expression, response to microbial challenge and their role in phagocytosis of the yeast Candida albicans. Dev Comp Immunol. 2015 Jan;48(1):55-64. IF 2.4
  43. Tonk M, Cabezas-Cruz A, Valdés JJ, Rego RO, Chrudimská T, Strnad M, Šíma R, Bell-Sakyi L, Franta Z, Vilcinskas A, Grubhoffer L, Rahnamaeian M. Defensins from the tick Ixodes scapularis are effective against phytopathogenic fungi and the human bacterial pathogen Listeria grayi. Parasit Vectors. 2014 Dec 3;7:554. IF 3.5
  44. Golovchenko M, Sima R, Hajdusek O, Grubhoffer L, Oliver JH Jr, Rudenko N. Invasive potential of Borrelia burgdorferi sensu stricto ospC type L strains increases the possible disease risk to humans in the regions of their distribution. Parasit Vectors. 2014 Nov 28;7:538. IF 3.5
  45. Urbanová V, Hartmann D, Grunclová L, Šíma R, Flemming T, Hajdušek O, Kopáček P. IrFC - An Ixodes ricinus injury-responsive molecule related to Limulus Factor C. Dev Comp Immunol. 2014 Oct;46(2):439-47. IF 2.4
  46. Sprong H, Trentelman J, Seemann I, Grubhoffer L, Rego RO, Hajdušek O, Kopáček P, Šíma R, Nijhof AM, Anguita J, Winter P, Rotter B, Havlíková S, Klempa B, Schetters TP, Hovius JW. ANTIDotE: anti-tick vaccines to prevent tick-borne diseases in Europe. Parasit Vectors. 2014 Feb 21;7:77. IF 3.5
  47. Kacerovska D, Michal M, Kuroda N, Tanaka A, Sima R, Denisjuk N, Kreuzberg B, Ricarova R, Kazakov DV. Hybrid peripheral nerve sheath tumors, including a malignant variant in type 1 neurofibromatosis. Am J Dermatopathol. 2013 Aug;35(6):641-9. IF 1.0
  48. Alama-Bermejo G, Šíma R, Raga JA, Holzer AS. Understanding myxozoan infection dynamics in the sea: seasonality and transmission of Ceratomyxa puntazzi. Int J Parasitol. 2013 Aug;43(9):771-80. IF 3.2
  49. Hajdušek O, Síma R, Ayllón N, Jalovecká M, Perner J, de la Fuente J, Kopáček P. Interaction of the tick immune system with transmitted pathogens. Front Cell Infect Microbiol. 2013 Jul 16;3:26. IF 4.8
  50. Petersson F, Síma R, Grossmann P, Michal M, Kuroda N, Hora M, Yang X, Kinkor Z, Trivunic S, Zalud R, Sperga M, Jaunmuktane Z, Branžovský J, Ferda J, Hes O. Renal small cell oncocytoma with pseudorosettes A histomorphologic, immunohistochemical, and molecular genetic study of 10 cases. Hum Pathol. 2011 Nov;42(11):1751-60. IF 2.6
  51. Linos K, Sedivcová M, Cerna K, Sima R, Kazakov DV, Nazeer T, Glazyrin A, Valerian BT, Carlson JA. Extra nuchal-type fibroma associated with elastosis, traumatic neuroma, a rare APC gene missense mutation, and a very rare MUTYH gene polymorphism: a case report and review of the literature. J Cutan Pathol. 2011 Nov;38(11):911-8. IF 1.1
  52. Skalova A, Sima R, Kaspirkova-Nemcova J, Simpson RH, Elmberger G, Leivo I, Di Palma S, Jirasek T, Gnepp DR, Weinreb I, Perez-Ordoñez B, Mukensnabl P, Rychly B, Hrabal P, Michal M. Cribriform adenocarcinoma of minor salivary gland origin principally affecting the tongue: characterization of new entity. Am J Surg Pathol. 2011 Aug;35(8):1168-76. IF 4.2
  53. Petersson F, Síma R, Sperga M, Kazakov DV, Michal M, Hora M, Ferda J, Sulc M, Mičulka P, Haferník J, Rychnovský J, Hes O. Lymphocyte-rich renal cell carcinoma: an unusual histomorphologic manifestation of a tumor that is not part of lynch syndrome. Appl Immunohistochem Mol Morphol. 2011 Dec;19(6):519-27. IF 1.2
  54. Ondic O, Kalis V, Sima R. Borderline papillary serous tumor of the fimbriated end of the fallopian tube with peritoneal implants. J Obstet Gynaecol Res. 2011 Nov;37(11):1702-5. IF 1.5
  55. Yamaguchi T, Kuroda N, Imamura Y, Hes O, Michal M, Sima R, Nakayama K, Sato N. Imprint cytologic features of chromophobe renal cell carcinoma morphologically resembling renal oncocytoma: Is this an oncocytic variant of chromophobe renal cell carcinoma? Diagn Cytopathol. 2010 Jul;38(7):509-13. IF 1.0
  56. Kuroda N, Hosokawa T, Michal M, Hes O, Sima R, Ohe C, Lee GH. Clear cell renal cell carcinoma with focal renal angiomyoadenomatous tumor-like area. Ann Diagn Pathol. 2010 Jun 16. IF 1.4
  57. Sima R, Vanecek T, Kacerovska D, Trubac P, Cribier B, Rutten A, Vazmitel M, Spagnolo DV, Litvik R, Vantuchova Y, Wyers W, Pearce RL, Pearn J, Michal M, Kazakov DV. Brooke-Spiegler syndrome: report of 10 patients from 8 families with novel germline mutations. Evidence of diverse somatic mutations in the same patient regardless of tumor type. Diagn Mol Pathol. 2010 Jun;19(2):83-91. IF 2.2
  58. Skalova A, Vanecek T, Sima R, Laco J, Weinreb I, Perez-Ordonez B, Starek I, Geierova M, Simpson RHW, Passador-Santos F, Ryska A, Leivo I, Kinkor Z, Michal M. Mammary analogue secretory carcinoma of salivary glands, containing the ETV6-NTRK3 fusion gene: a hitherto undescribed salivary gland tumor entity. Am J Surg Pathol. 2010 May;34(5):599-608. IF 4.2
  59. Petersson F, Bulimbasic S, Sima R, Michal M, Hora M, Malagon HD, Matoska J, Hes O. Large cell calcifying Sertoli cell tumor: a clinicopathologic study of 1 malignant and 3 benign tumors using histomorphology, immunohistochemistry, ultrastructure, comparative genomic hybridization, and polymerase chain reaction analysis of the PRKAR1A gene. Hum Pathol. 2010 Apr;41(4):552-9. Epub 2009 Dec 11. IF 2.6
  60. Michal M, Hes O, Nemcova J, Sima R, Kuroda N, Bulimbasic S, Franco M, Sakaida N, Danis D, Kazakov DV, Ohe C, Hora M. Renal angiomyoadenomatous tumor: morphologic, immunohistochemical, and molecular genetic study of a distinct entity. Virchows Arch. 2009 Jan;454(1):89-99. IF 3.1
  61. Kazakov DV, Zelger B, Rütten A, Vazmitel M, Spagnolo DV, Kacerovska D, Vanecek T, Grossmann P, Sima R, Grayson W, Calonje E, Koren J, Mukensnabl P, Danis D, Michal M. Morphologic Diversity of Malignant Neoplasms Arising in Preexisting Spiradenoma, Cylindroma, and Spiradenocylindroma Based on the Study of 24 Cases, Sporadic or Occurring in the Setting of Brooke-Spiegler Syndrome. Am J Surg Pathol. 2009 May;33(5):705-19. IF 4.2
  62. Kazakov DV, Ivan D, Kutzner H, Spagnolo DV, Grossmann P, Vanecek T, Sima R, Kacerovska D, Shelekhova KV, Denisjuk N, Hillen U, Kuroda N, Mukensnabl P, Danis D, Michal M. Cutaneous hidradenocarcinoma: a clinicopathological, immunohistochemical, and molecular biologic study of 14 cases, including Her2/neu gene expression/amplification, TP53 gene mutation analysis, and t(11;19) translocation. Am J Dermatopathol. 2009 May;31(3):236-47. IF 1.0
  63. Kazakov DV, Sima R, Vanecek T, Kutzner H, Palmedo G, Kacerovska D, Grossmann P, Michal M. Mutations in exon 3 of the CTNNB1 gene (beta-catenin gene) in cutaneous adnexal tumors. Am J Dermatopathol. 2009 May;31(3):248-55. IF 1.0
  64. Skálová A, Sima R, Vanecek T, Muller S, Korabecna M, Nemcova J, Elmberger G, Leivo I, Passador-Santos F, Walter J, Rousarova M, Jedlickova K, Curik R, Geierova M, Michal M. Acinic Cell Carcinoma With High-grade Transformation: A Report of 9 Cases With Immunohistochemical Study and Analysis of TP53 and HER-2/neu Genes. Am J Surg Pathol. 2009 May 20. IF 4.2
  65. Bulimbasic S, Ljubanovic D, Sima R, Michal M, Hes O, Kuroda N, Persec Z. Aggressive high-grade mucinous tubular and spindle cell carcinoma. Hum Pathol. 2009 Jun;40(6):906-7. IF 2.6
  66. Kacerovska D, Sima R, Michal M, Hes O, Roucka P, Zarybnicka M, Hora M, Chudacek Z, Kazakov DV. Carney complex: a clinicopathologic and molecular biological study of a sporadic case, including extracutaneous and cutaneous lesions and a novel mutation of the PRKAR1A gene. J Am Acad Dermatol. 2009 Jul;61(1):80-7. IF 11.8
  67. Novotný Z, Krízan J, Síma R, Síma P, Uher P, Zech N, Hütelová R, Baborová P, Ulcová-Gallová Z, Subrt I, Ulmanová E, Houdek Z, Rokyta Z, Babuska V, Králícková M. Leukaemia inhibitory factor (LIF) gene mutations in women diagnosed with unexplained infertility and endometriosis have a negative impact on the IVF outcome. A pilot study. Folia Biol (Praha). 2009;55(3):92-7. IF 1.1
  68. Hes O, Michal M, Síma R, Vaněček T, Brunelli M, Martignoni G, Kuroda N, Alvarado Cabrero I, Perez-Montiel D, Hora M, Urge T, Dvořák M, Jarošová M, Yang X. Renal oncocytoma with and without intravascular extension into the branches of renal vein have the same morphological, immunohistochemical, and genetic features. Virchows Arch. 2008 Feb;452(2):193-200. IF 3.1
  69. Vazmitel M, Michal M, Shelekhova KV, Sima R, Mukensnabl P, Kazakov DV. Vascular changes in merkel cell carcinoma based on a histopathological study of 92 cases. Am J Dermatopathol. 2008 Apr;30(2):106-11. IF 1.0
  70. Skalova A, Síma R, Bohuš P, Cuřík R, Lukáš J, Michal M. Endolymphatic sac tumor (aggressive papillary tumor of middle ear and temporal bone) Report of two cases with analysis of the VHL gene. Pathol Res Pract. 2008;204(8):599-606. IF 3.2
  71. Kazakov DV, Belousova IE, Kacerovska D, Sima R, Vanecek T, Vazmitel M, Pizinger K, Michal M. Hyperplasia of hair follicles and other adnexal structures in cutaneous lymphoproliferative disorders: a study of 53 cases, including so-called pseudolymphomatous folliculitis and overt lymphomas. Am J Surg Pathol. 2008 Oct;32(10):1468-78. IF 4.2
  72. Hes O, Síma R, Nemcová J, Hora M, Bulimbasic S, Kazakov DV, Urge T, Reischig T, Dvorák M, Michal M. End-stage kidney disease: gains of chromosomes 7 and 17 and loss of Y chromosome in non-neoplastic tissue. Virchows Arch. 2008 Oct;453(4):313-9. IF 3.1
  73. Králícková M, Ulcová-Gallová Z, Síma R, Vanecek T, Síma P, Krizan J, Suchá R, Uher P, Hes O, Novotný Z, Rokyta Z, Vetvicka V. Association of the leukemia inhibitory factor gene mutation and the antiphospholipid antibodies in the peripheral blood of infertile women. Folia Microbiol (Praha). 2007;52(5):543-8. IF 3.1
  74. Michal M, Kazakov DV, Síma R, Vanecek T. Primitive small cell tumor with epithelial, gangliocytic, neuroendocrine, and mesenchymal differentiation: report of 2 cases. Int J Surg Pathol. 2007 Oct;15(4):429-36. IF 1.0
  75. Belousova IE, Nikonova SM, Sima R, Kazakov DV. Granulomatous slack skin with clonal T-cell receptor-gamma gene rearrangement in skin and lymph node. Br J Dermatol. 2007 Aug;157(2):405-7. IF 9.6
  76. Kazakov DV, Bisceglia M, Spagnolo DV, Kutzner H, Belousova IE, Hes O, Sima R, Vanecek T, Yang Y, Michal M. Apocrine Mixed Tumors of the Skin With Architectural and/or Cytologic Atypia: A Retrospective Clinicopathologic Study of 18 Cases. Am J Surg Pathol. 2007 Jul;31(7):1094-1102. IF 4.2
  77. Daum O, Grossmann P, Vanecek T, Sima R, Mukensnabl P, Michal M. Diagnostic morphological features of PDGFRA-mutated gastrointestinal stromal tumors: molecular genetic and histologic analysis of 60 cases of gastric gastrointestinal stromal tumors. Ann Diagn Pathol. 2007 Feb;11(1):27-33. IF 1.4
  78. Kazakov DV, Belousova IE, Sima R, Michal M. Mammary type tubulolobular carcinoma of the anogenital area: report of a case of a unique tumor presumably originating in anogenital mammarylike glands. Am J Surg Pathol. 2006 Sep;30(9):1193-6. IF 4.2
  79. Boudova L, Kazakov DV, Jindra P, Sima R, Vanecek T, Kuntscher V, Vera V, Bouda J, Michal M. Primary cutaneous histiocyte and neutrophil-rich CD30+ and CD56+ anaplastic large-cell lymphoma with prominent angioinvasion and nerve involvement in the forehead and scalp of an immunocompetent woman. J Cutan Pathol. 2006 Aug;33(8):584-9. IF 1.1
  80. Skalova A, Gnepp DR, Simpson RH, Lewis JE, Janssen D, Sima R, Vanecek T, Di Palma S, Michal M. Clonal nature of sclerosing polycystic adenosis of salivary glands demonstrated by using the polymorphism of the human androgen receptor (HUMARA) locus as a marker. Am J Surg Pathol. 2006 Aug;30(8):939-44. IF 4.2
  81. Kralickova M, Sima R, Vanecek T, Sima P, Rokyta Z, Ulcova-Gallova Z, Sucha R, Uher P, Hes O. Leukemia inhibitory factor gene mutations in the population of infertile women are not restricted to nulligravid patients. Eur J Obstet Gynecol Reprod Biol. 2006 2006 Aug;127(2):231-5. IF 1.9
  82. Michal M, Vanecek T, Sima R, Mukensnabl P, Hes O, Kazakov DV, Matoska J, Zuntova A, Dvorak V, Talerman A. Mixed germ cell sex cord-stromal tumors of the testis and ovary. Morphological, immunohistochemical, and molecular genetic study of seven cases. Virchows Arch. 2006 May;448(5):612-22. IF 3.1
  83. Kazakov DV, Bisceglia M, Sima R, Michal M. Adenosis tumor of anogenital mammary-like glands: a case report and demonstration of clonality by HUMARA assay. J Cutan Pathol. 2006 Jan;33(1):43-6. IF 1.1
  84. Boudova L, Kazakov DV, Sima R, Vanecek T, Torlakovic E, Lamovec J, Kutzner H, Szepe P, Plank L, Bouda J, Hes O, Mukensnabl P, Michal M. Cutaneous lymphoid hyperplasia and other lymphoid infiltrates of the breast nipple: a retrospective clinicopathologic study of 56 patients. Am J Dermatopathol. 2005 Oct;27(5):375-86. IF 1.0
  85. Kazakov DV, Vanecek T, Sima R, Kutzner H, Michal M. Dendritic cell neurofibroma with pseudorosettes lacks mutations in exons 1-15 of the neurofibromatosis type 2 gene. Am J Dermatopathol. 2005 Aug;27(4):286-9. IF 1.0
  86. Kazakov DV, Sima R, Michal M. Hemosiderotic fibrohistiocytic lipomatous lesion: clinical correlation with venous stasis. Virchows Arch. 2005 Jul;447(1):103-6. IF 3.1
  87. Daum O, Sima R, Mukensnabl P, Vanecek T, Brouckova M, Michal M. Pigmented Solid-Pseudopapillary Neoplasm of the Pancreas. Pathol Int. 2005 May;55(5):280-4. IF 3.4
  88. Daum O, Klecka J, Ferda J, Treska V, Vanecek T, Sima R, Mukensnabl P, Michal M. Gastrointestinal stromal tumor of the pancreas: case report with documentation of KIT gene mutation. Virchows Arch. 2005 Apr;446(4):470-2. IF 3.1
  89. Hes O, Benakova K, Vanecek T, Sima R, Michal M. Clear cell type of renal cell carcinoma with numerous hyaline globules: a diagnostic pitfall. Pathol Int. 2005 Mar;55(3):150-4. IF 3.4
  90. Kazakov DV, Pitha J, Sima R, Vanecek T, Shelekhova K, Mukensnabl P, Michal M. Hybrid peripheral nerve sheath tumors: Schwannoma-perineurioma and neurofibroma-perineurioma. A report of three cases in extradigital locations. Ann Diagn Pathol. 2005 Feb;9(1):16-23. IF 1.4
  91. Kazakov DV, Hes O, Hora M, Sima R, Michal M. Primary intranodal cellular angiolipoma. Int J Surg Pathol. 2005 Jan;13(1):99-101. IF 1.0
  92. Daum O, Vanecek T, Sima R, Curik R, Zamecnik M, Yamanaka S, Mukensnabl P, Benes Z, Michal M. Reactive nodular fibrous pseudotumors of the gastrointestinal tract: report of 8 cases. Int J Surg Pathol. 2004 Oct;12(4):365-74. IF 1.0
  93. Michal M, Vanecek T, Sima R, Mukensnabl P, Boudova L, Brouckova M. Primary capillary hemangioblastoma of peripheral soft tissues. Am J Surg Pathol. 2004 Jul;28(7):962-6. IF 4.2
  94. Daum O, Hes O, Vanecek T, Benes Z, Sima R, Zamecnik M, Mukensnabl P, Hadravska S, Curik R, Michal M. Vanek's tumor (inflammatory fibroid polyp). Report of 18 cases and comparison with three cases of original Vanek's series. Ann Diagn Pathol. 2003 Dec;7(6):337-47. IF 1.4
  95. Hes O, Hora M, Vanecek T, Sima R, Sulc M, Havlicek F, Beranova M, Michal M. Conventional renal cell carcinoma with granulomatous reaction: a report of three cases. Virchows Arch. 2003 Aug;443(2):220-1. IF 3.1

Kapitoly v knihách

  1. Kopáček P, Lu S, Urbanová V, Šíma R, Sojka D, Perner J. 2025: Physiology of the tick midgut. In: Advances in Insect Physiology 68: 1–64.
  2. Vrtišková Nejezchlebová L, Perner J, Šíma R. 2024: Klíště. Fascinující tvor, který vypije i losa za živa. In: Zvířata v éře lidí: 126-137. (ocenění ČRo Plus Litera za publicistiku, Magnesia Litera 2025)
  3. Vrtišková Nejezchlebová L, Perner J, Šíma R. 2024: Klíště. In: Fuj to je hnusný: 22-33.
  4. Kopáček P, Perner J, Sojka D, Šíma R, Hajdušek O. 2018: Molecular Targets to Impair Blood Meal Processing in Ticks. In: Ectoparasites: Drug Discovery Against Moving Targets: 141-165.

Publikace bez IF

  1. Černá K, Šíma R, Němcová J. Molecular detection of infectious agents in the pathology laboratory. Cesk Patol. 2025;60(4):169-175.
  2. Němcová J, Černá K, Šíma R, Luňáčková IK, Rob F, Martínek P, Bouda J, Jana, Šmahelová, Ondič O. Methylation analysis as an auxiliary tool in cytological diagnostics of infrequent anogenital lesions - a pilot study. Cesk Patol. 2023 Spring;59(1):26-31.
  3. Rusina R, Keller O, Síma R, Zámečník J. Peripheral neuropathy in Whipples disease: a case report. Cesk Patol. 2012 Apr;48(2):97-9.
  4. Kacerovská D, Michal M, Síma R, Grossmann P, Kazakov DV. Carney complex. Cesk Patol. 2011 Oct;47(4):192-7.
  5. Dubská L, Vyskocilová M, Nenutil R, Valík D, Knoflícková D, Fabian P, Kocáková I, Demlová R, Beránek M, Drastíková M, Vosmiková H, Bóday A, Horká K, Símová J, Drábek J, Ehrmann J, Hajdúch M, Matejcková M, Síma R, Tvrdík D, Povýsil C, Ryska A. KRAS mutation testing in therapeutic algorithm for treatment of metastatic colorectal carcinoma. Cas Lek Cesk. 2011;150(6):321-6.
  6. Shelekhova KV, Sima R, Orlov AIu, Kazakov DV, Michal M. Intraneural perineurioma: clinical and morphological characteristics and a molecular genetic study of the neurofibromatosis type 2 gene. Arkh Patol. 2008 Jul-Aug;70(4):20-2.
  7. Králíčková M, Síma R, Martínek P, Vanecek T, Ulcová-Gallová Z, Síma P, Krizan J, Kalis V, Stepán Jr, Stepán J, Rokyta Z, Uher P, Hes O. The leukemia inhibitory factor gene mutations in the population of infertile women: the heterozygote transition G to A on the position 3400 does not affect the outcome of the infertility treatment. Ceska Gynekol. 2007 Aug;72(4):293-8.
  8. Kinkor Z, Sima R, Skalova A, Boudova L, Pekova S, Dvorakova D, Dedic K, Kracik M, Janousek M, Michal M. Isolated lymphadenopathy as the first presentation of systemic mastocytosis--description of two cases Cesk Patol. 2006 Jan;42(1):34-8.
  9. Hes O, Vanecek T, Sima R, Hora M, Velickinova H, Grossmann P, Kovar J, Michal M. Tumorous diseases in patients with the testicular feminization syndrome ("androgen insensitivity" syndrome) - description of two cases. Ceska Gynekol. 2005 Mar;70(2):113-7.
  10. Boudova L, Vanecek T, Sima R, Bouda J, Hes O, Fakan F. Role of p27Kip1 protein in the cell cycle and its appearance in lymphoid tissues, particularly non-Hodgkin's B-cell lymphomas. (Review). Cesk Patol. 2003 Jul;39(3):126-9.

Kontakt

Email: sima@biopticka.cz